PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.048520.1
Common NameCsa_6G526230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 516aa    MW: 57516.6 Da    PI: 6.5732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.048520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31260318259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Cucsa.048520.1 260 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 318
                     699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.96254320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-31256320IPR003657WRKY domain
SuperFamilySSF1182903.92E-26258320IPR003657WRKY domain
SMARTSM007741.4E-37259319IPR003657WRKY domain
PfamPF031061.2E-25261318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MENYEEVGDL TDIVRGRSST TTTRSSTTTT TTTTSSSSNC KTEILADHHL QDSTSFYYSS  60
SSQLLQLQDH QHHQYNFGDP FCSVVAPSVL DHHLHQHHHQ LPVDNSTNIN AFFNGISASS  120
TTTTAAAAHQ DHEDHHEVMK SSPCNSNLFS RMLQISPSPN KFQTISSLTN NSPPPSNFLI  180
SNHSPTTTTT PLHPDHHLHH FLHHHDHNNN NNNNTSSALH ISSPRNPPGI KRRKSQARKV  240
VCVPAPVAAS SRPNGEVIPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS  300
RTDPNMLVIT YTSEHNHPWP TQRNALAGSS RSSQQSSKNN TSTITTTSTT TQPNSSKLVH  360
HKNKQEVQEE EEEQDHENNN DGTTMTLLSS TAAVDEEASN KNNNNVKEEE MIENELMMSS  420
TSEGGLIDED HDFFADLEEL ETDPLTLLFN TTTQQQQQQQ QHLQQPPHKL EQIIKGSAAA  480
ACLHDVVPFN HLFDWPPPPH QEQPPPSSPT NRGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-162613201977Probable WRKY transcription factor 4
2lex_A2e-162613201977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134891.20.0PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A0A0KKY70.0A0A0A0KKY7_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2461133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-52WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]